[Biopython] searching for a human chromosome position
dr goettel
biopythonlist at gmail.com
Mon Jun 1 12:03:15 EDT 2009
>
>
> If you really want to use Entrez, try and manually compile a list of
> accession numbers first (e.g. NC_000003). Personally, as I said
> before, I would just download the chromosomes by FTP.
>
That's what I have done! thanks. I'm going to parse the GenBank files using
Bio.SeqIO.
>
> > Fortunately, all the positions that I need to search are allways in exons
> > and withing a gene CDS.
>
> Can you give an explicit example of a particular chromosome accession
> and the location you care about?
>
I don't know anyone yet. I'm going to ask for some examples and will send
you.
>
> Peter
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