[Biopython] Superpose structures

Peter Cock p.j.a.cock at googlemail.com
Fri Dec 18 22:55:44 UTC 2009


2009/12/18 Yasser Almeida Hernández <pedro.al at fenhi.uh.cu>:
> Hi all!!
>
> I want to superpose some structures on a reference one.
> The fixed selection is the backbone atoms of two residues and i want to
> superpose the rest of structures based in this atoms (for the same residues
> in the others structures, of course)
>
> Reference selection:
> [[<Atom O>, <Atom C>, <Atom CA>, <Atom N>], [<Atom O>, <Atom C>, <Atom CA>,
> <Atom N>]]
>
> The moving selection is a similar nested list, with the list of the residues
> backbone atoms to move in the query structures....
>
> How can i superpose these structures based in the backbone atoms of two
> residues?
>
> Please help me...
> Thanks

Does this example help?
http://www.warwick.ac.uk/go/peter_cock/python/protein_superposition/

Peter




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