[BioPython] Cladograms

[Renato Alves]

Where "which will give the representation I need" is read should be 
"which will *not* give the representation I need".

Sorry for that.

Renato

Quoting Renato Alves on 11/27/2008 03:17 PM:
> Hi everyone,
>
> I've been searching the web for python modules to do cladograms but 
> the only relevant stuff I found was relative to dendograms and 
> hierarchical clustering which will give the representation I need.
> My goal is something that resembles a heatmap[1] but where the trees 
> will be cladograms[2] instead of the result of clustering steps.
> I know that probably I won't find modules doing exactly what I want, 
> which is why I'm searching for tools to do each step separately and 
> try to glue them somehow. For the heatmap I have something already 
> that will probably do the job, but for the cladograms I couldn't find 
> any decent module.
> Do you happen to know any dark alley in BioPython or any other 
> external module that would allow me to do the cladogram?
>
> Thanks,
> Renato
>
> [1] - 
> http://www2.warwick.ac.uk/fac/sci/moac/currentstudents/peter_cock/r/heatmap/default_heatmap.png 
>
> [2] - 
> http://www.csupomona.edu/~jcclark/classes/bot125/resource/graphics/c/cladogram.gif 
>
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