[BioPython] [PopGen] a random Haplotype Sets generator

Tiago Antão tiagoantao at gmail.com
Thu Nov 13 11:38:21 EST 2008


Hi,

> For example, we wanted to write a function to calculate the Fst
> statistics over snps data.

Pigging back on Bruce comment on APIs being future proof, this is not
really what we want ;)

We want to be able to calculate Fst for any marker (SNPs,
Microsatellites, AFLPs, sequences).

We cannot have something like:
calc_fst(put_your_snps_here)
What we want is:
calc_fst(put_your_marker_frequencies_here)

We want to serve all, not just ourselves ;)

Tiago


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