[BioPython] [PopGen] a random Haplotype Sets generator

[Tiago Antão]

I love the comment documentation, makes everything very easy to
understand at first read.

Where would you think this would fit in a PopGen hierarchy? Or to put
it in another way, please complete Bio.PopGen....

Tiago

On Thu, Nov 13, 2008 at 9:37 AM, Giovanni Marco Dall'Olio
<dalloliogm at gmail.com> wrote:
> I am writing a module to generate semi-random sets of haplotypes.
> For example, let's say you want a set of 100 sequences of 200 SNPs, in
> which an hotspot is located in a certain position: the module is meant
> to generate such datasets, mainly for testing purposes.
>
> You can find the code here:
> - http://github.com/dalloliogm/biopython---popgen/tree/master/src/PopGen/Gio/HaplotypesGenerator.py
>
> Could you give me some suggestions about this? For example, which
> kinds of haplotype model would you think it could be useful to
> implement (see the function paramsGenerator)?
> What do you think about the way I have written this code? Would you
> implement it in a different way?
>
> --
> -----------------------------------------------------------
>
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http://www.tiago.org