[BioPython] Remote PSI-Blast

Peter peter at maubp.freeserve.co.uk
Tue May 20 16:13:40 UTC 2008


On Tue, May 20, 2008 at 5:08 PM, Raul Guerra <colochera at gmail.com> wrote:
> Hello Everybody,
>
> I just began using Biopython.I need to do a remote PSI-Blast, and I cannot
> find how to do it online.
>
> Does anybody know how to do it? Is it implemented in BioPython or do I have
> to implement it?

I'm not sure if the NCBI have an official way to access the PSI-Blast
search online. If you have a look at Bug 2496, we've made some headway
in trying to do it anyway, but I would really like some official
documentation from the NCBI on if/how they expect this to work.
http://bugzilla.open-bio.org/show_bug.cgi?id=2496

Peter



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