[BioPython] Module for ace assembly format

[Bruno Santos]

The ACE file in my case is the one produced by an assembly of a newer
generation of sequencer machines, more precisely from the assembler of GS
FLX from Roche 454Life Sciences, and it is working perfectly. So I will try
to write some documentation during this week and then I contact you to know
how to upload the file so it can be used in the cookbook. 
Thank you for your help.

Bruno Santos


-----Mensagem original-----
De: Peter Cock [mailto:p.j.a.cock at googlemail.com] 
Enviada: terça-feira, 25 de Março de 2008 14:35
Para: Bruno Santos
Cc: biopython at biopython.org
Assunto: Re: [BioPython] Module for ace assembly format

On Tue, Mar 25, 2008 at 2:23 PM, Bruno Santos <bsantos at biocant.pt> wrote:
> Hi,
>
>  I'm currently working in an assembly project and I need to read some
files
>  in ace assembly format, my question is if biopython have any module to do
>  this. I have done a search in google and I found some references to a
>  bioperl module, but in the biopython website I didn't find any
information
>  about this format.

Hi Bruno,

Have a look at the Bio.Sequencing.Ace module for ACE files output by
PHRAP.  We don't seem to have anything in the main tutorial on this,
so if you would like to write a short piece for the "cookbook" chapter
that would be helpful

Peter