[BioPython] KEGG Gene parser

Peter biopython at maubp.freeserve.co.uk
Fri Dec 12 11:06:07 UTC 2008


On Thu, Dec 11, 2008 at 5:25 PM, Renato Alves <rjalves at igc.gulbenkian.pt> wrote:
> Hi everyone,
>
> Bringing back the KEGG Gene parser subject (from january 2008), Bio.KEGG has
> some modules for KEGG resources but not Gene. SeqIO doesn't seem to support
> KEGG either.

What are you trying to do?  Do you want to parse gene files from KEGG
into sequence objects?  If so, could you point me at an particular
example file so I have a better feel for the problem (and if it would
fit into Bio.SeqIO).

Thanks,

Peter



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