[BioPython] Emboss eprimer3-Product Size Range
Stefanie Lück
lueck at ipk-gatersleben.de
Mon Dec 1 13:13:21 UTC 2008
Hi!
I'm working with Emboss eprimer3 and I have a short question:
How can I enter the paramter "product size range"? Usually it's something like 500-1000 450-500 etc.
If I add this into python, nothing happens:
from Bio import Fasta
from Bio.Emboss.Applications import Primer3Commandline
from Bio.Application import generic_run
from Bio.Emboss import Primer3
primer_cl = Primer3Commandline()
primer_cl.set_parameter("-sequence", "in.txt")
primer_cl.set_parameter("-outfile", "out.pr3")
primer_cl.set_parameter("-productsizerange", "100-200")
primer_cl.set_parameter("-target", "%s,%s" % (50, 100))
result, messages, errors = generic_run(primer_cl)
Whereas
primer_cl.set_parameter("-productsizerange", "100")
gives a primer output.
Thanks in advance!
Stefanie
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