[BioPython] Problem with Entrez?
Sebastian Bassi
sbassi at gmail.com
Sun Aug 24 23:00:08 UTC 2008
On Sun, Aug 24, 2008 at 7:46 PM, Sebastian Bassi <sbassi at gmail.com> wrote:
>> As a workaround I specify the format with rettype='gb'
> Sorry, the workaround is to set retmode to xml:
> handle = Entrez.efetch(db="nucleotide", id="326625", retmode='xml')
> But I thought that this should be default behivor.
My proposed solution is:
Change line
variables = {'db' : db}
To:
variables = {'db' : db , 'retmode' : 'xml'}
In Bio/Entrez/__init__.py
Doing this, it work as expected, but I don't know if this breaks something else.
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