[BioPython] Syntax error while parsing Blast output

Peter biopython at maubp.freeserve.co.uk
Thu Oct 25 09:57:10 UTC 2007


Michiel De Hoon wrote:
> 
> Sorry, I was confused; I was under the impression that the plain text Blast
> parser was already deprecated (I was getting confused with the blast and
> blasturl functions in Bio.Blast.NCBIWWW, which are already deprecated in
> favor of qblast). OK, then let's keep the plain-text Blast parser as is, and
> maybe think again about this issue after the upcoming release.
> 

Panic averted - but it was good to hear some passionate defence of the 
plain text BLAST  parser, it looks like it still gets quite a bit of use.

Peter




More information about the Biopython mailing list