[BioPython] Biopython in Freespire

Sebastian Bassi sbassi at gmail.com
Thu Sep 28 23:49:32 UTC 2006


To avoid previous problems, I am trying to install Biopython under Freespire.
Easy methods (CNR and apt-get) has only old packages. So I will do it "by hand".
I have both python2.3 and 2.4
Fist I wanted to meet dependencies.
I started with Numpy, downloaded it from Sourceforge and followed the
INSTALL file:

sbassi at hp:~/bioinfo/Numeric-24.2$ python2.4 setup.py build
running build
running build_py
creating build
creating build/lib.linux-i686-2.4
copying Lib/Matrix.py -> build/lib.linux-i686-2.4
copying Lib/UserArray.py -> build/lib.linux-i686-2.4
copying Lib/MLab.py -> build/lib.linux-i686-2.4
copying Lib/Precision.py -> build/lib.linux-i686-2.4
copying Lib/RandomArray.py -> build/lib.linux-i686-2.4
copying Lib/LinearAlgebra.py -> build/lib.linux-i686-2.4
copying Lib/numeric_version.py -> build/lib.linux-i686-2.4
copying Lib/ArrayPrinter.py -> build/lib.linux-i686-2.4
copying Lib/Numeric.py -> build/lib.linux-i686-2.4
creating build/lib.linux-i686-2.4/FFT
copying Packages/FFT/Lib/FFT.py -> build/lib.linux-i686-2.4/FFT
copying Packages/FFT/Lib/__init__.py -> build/lib.linux-i686-2.4/FFT
creating build/lib.linux-i686-2.4/MA
copying Packages/MA/Lib/MA.py -> build/lib.linux-i686-2.4/MA
copying Packages/MA/Lib/MA_version.py -> build/lib.linux-i686-2.4/MA
copying Packages/MA/Lib/__init__.py -> build/lib.linux-i686-2.4/MA
creating build/lib.linux-i686-2.4/RNG
copying Packages/RNG/Lib/Statistics.py -> build/lib.linux-i686-2.4/RNG
copying Packages/RNG/Lib/__init__.py -> build/lib.linux-i686-2.4/RNG
creating build/lib.linux-i686-2.4/Numeric_headers
copying Include/__init__.py -> build/lib.linux-i686-2.4/Numeric_headers
running build_ext
error: invalid Python installation: unable to open
/usr/lib/python2.4/config/Makefile (No such file or directory)

I don't have a config directory under /usr/lib/python2.4/
Any help?

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