[BioPython] Problem following the Cookbook, almost resolved :)

Michiel Jan Laurens de Hoon mdehoon at c2b2.columbia.edu
Thu Sep 28 16:29:53 UTC 2006


It shouldn't matter who made the XML file; NCBIXML can parse either one. 
Check your Biopython version; most likely, the problem lies there.

--Michiel.

Sebastian Bassi wrote:
> Sorry, I think I know what the problem was. I was parsing the XML file
> produced by my local blast webserver, and I think that NCBIXML is for
> parsing the XML output from the NCBI webserver and I should use
> NCBIStandalone parser. Isn't it?
> 


-- 
Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1130 St Nicholas Avenue
New York, NY 10032



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