[BioPython] Bug in GenBank module - record.feature method ?

Srinivas Iyyer srini_iyyer_bio at yahoo.com
Sat Dec 24 17:13:21 EST 2005


Aaaaaaaaagrrrrrrrrrhhhhh ..... why was i floundering
when i worked on this gene2go in the past.  wasted a
lot of time despite knowing this fact....

anyways, thank you very much. 



--- Alexander Morgan <amorgan at mitre.org> wrote:

> If you're not tied to the GenBank format, you might
> have greater ease
> getting the GO codes associated with EntrezGene
> identifiers.
> 
> ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/
> 
> The gene2go file contains the GO code assignments,
> and the gene2accession
> the mappings to other accession numbers; there is
> also a gene2refseq file.
> 
> They are all in an easy to parse tab delimited
> format, and you can zip
> through them pretty fast and load what you need into
> a hash, a shelf file or
> a DB.
> 
> 
> On 12/24/05 9:49 AM, "Srinivas Iyyer"
> <srini_iyyer_bio at yahoo.com> wrote:
> > 
> > 2. If there any other way to parse GO annotations
> for
> > all RefSeq sequences in GenBank format.
> > 
> 
> 



		
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