RE : [BioPython] Parse bit score with NCBIXML module from BLAST output

Michiel De Hoon mdehoon at c2b2.columbia.edu
Thu Dec 22 07:38:08 EST 2005


> I checked the 1.41 version of Bio.Blast.NCBIXML.BlastParser() and could 
> not find any evidence for parsing of the <Hsp_bit-score> tag. Any solution?

If this is a recent addition to Blast reports, it may not have existed at the
time NCBIXML.BlastParser was written. Can you write a patch to
NCBIXML.BlastParser?

--Michiel.

Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032






More information about the BioPython mailing list