[BioPython] Problem to open PDBid 2mbw

Thomas Hamelryck thamelry at binf.ku.dk
Fri Dec 9 05:59:39 EST 2005


>
> Hi,
> I'm not so good in python and I'd like to use Bio.PDB (fromp biopython
> 1.41) in
> my scripts.
> When trying to open PDBid 2mbw, the error bellow is coming out (other
> PDBid
> seems to be opened normally).
> Any idea how to solve it?

Hi,

Water 230 is defined twice (the second water should be Water 239, BTW),
so it's a buggy PDB file. But if PERMISSIVE=1 this should have normally
been ignored, so it's also a bug in Bio.PDB - I'll fix it in CVS.

Cheers,

-Thomas




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