[BioPython] Installing Biopython, where is the Makefile?

David Lapointe d.lapointe at comcast.net
Wed Sep 1 22:09:09 EDT 2004


I get this error at KDTree also with Suse 9.1 ( x86_64). That's where the 
install exits so I don't know about subsequent modules.


On Wednesday 01 September 2004 09:47 pm, Michiel Jan Laurens de Hoon wrote:
> Does this error appear with KDTree only, or do you get the same error with
> other extension modules also?
>
> --Michiel.
>
> > /usr/bin/ld: build/temp.linux-x86_64-2.3/Bio/KDTree/KDTree.o: relocation
> > R_X86_64_32 can not be used when making a shared object; recompile with
> > -fPIC
> > build/temp.linux-x86_64-2.3/Bio/KDTree/KDTree.o: could not read symbols:
> > Bad value
> > collect2: ld returned 1 exit status
> > error: command 'g++' failed with exit status 1
>
> Sebastian Bassi wrote:
> > Hello,
> >
> > I am still working on trying to install Biopython on AMD64.
> > According to several post (and one on this list) I have to compile it
> > with -fPIC option.
> > But I can't find the Makefile.in where I should put this option.
> > Would the Makefile under Bio/KDTree a good place to put it? But I can't
> > find cflags there. I think that switching this parameter is the only
> > thing that is holding me back from compiling Biopython under AMD64.

-- 
 .david
 David Lapointe
"If you follow the old code of justice - an eye for an eye, 
a tooth for a tooth- you end  up with a blind toothless world" - M Ghandi


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