[BioPython] problem in NCBI Blast Parser ?

[Catherine Letondal]

Hi,

It seems that the Blast.NCBIWWW parser has a problem?
Traceback (most recent call last):
  File "blast_swissprot_parse.py", line 6, in ?
    record = blast_parser.parse(blast_results)
  File
  "/home1/sis/njoly/tmp/bp/biopython-1.24/build/lib.osf1-V5.1-alpha-2.3/Bio/Blast/NCBIWWW.py", line 48, in parse
  File
  "/home1/sis/njoly/tmp/bp/biopython-1.24/build/lib.osf1-V5.1-alpha-2.3/Bio/Blast/NCBIWWW.py", line 97, in feed
  File
  "/home1/sis/njoly/tmp/bp/biopython-1.24/build/lib.osf1-V5.1-alpha-2.3/Bio/ParserSupport.py", line 335, in read_and_call_until
  File
  "/home1/sis/njoly/tmp/bp/biopython-1.24/build/lib.osf1-V5.1-alpha-2.3/Bio/ParserSupport.py", line 411, in safe_readline
SyntaxError: Unexpected end of stream.

The file handler that was passed to the parse() method was on a file
just saved with the NCBIWWW.blast.read() method

(as explained in tutorials, either ours our the official one:
http://www.pasteur.fr/recherche/unites/sis/formation/python/ch11s06.html
	exercises 11.16 and 11.17.
)

Thanks a lot, it is for a course next Tuesday :-(


-- 
Catherine Letondal -- Pasteur Institute Computing Center