[BioPython] CG content and random sequence

Sebastian Bassi sbassi at asalup.org
Thu Jul 22 10:41:31 EDT 2004


Hello,

I did some scripts that I could turn into function to add into Biopython 
if there is some interest.
1) Calculate CG content of all the sequences contained on a FASTA file.
2) Generate N random sequence with a given CG content. This one is based 
on Ashleigh work he gave me in this list on 6/16. But I added a new 
parameter, CG content. His work is like mine but with a fixed 50% 
probability of CG. In my script, you set the CG content.




-- 
Best regards,

//=\ Sebastian Bassi - Diplomado en Ciencia y Tecnologia, UNQ   //=\
\=// IT Manager Advanta Seeds - Balcarce Research Center -      \=//
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