[BioPython] CG content and random sequence
Sebastian Bassi
sbassi at asalup.org
Thu Jul 22 10:41:31 EDT 2004
Hello,
I did some scripts that I could turn into function to add into Biopython
if there is some interest.
1) Calculate CG content of all the sequences contained on a FASTA file.
2) Generate N random sequence with a given CG content. This one is based
on Ashleigh work he gave me in this list on 6/16. But I added a new
parameter, CG content. His work is like mine but with a fixed 50%
probability of CG. In my script, you set the CG content.
--
Best regards,
//=\ Sebastian Bassi - Diplomado en Ciencia y Tecnologia, UNQ //=\
\=// IT Manager Advanta Seeds - Balcarce Research Center - \=//
//=\ Pro secretario ASALUP - www.asalup.org - PGP key available //=\
\=// E-mail: sbassi at genesdigitales.com - ICQ UIN: 3356556 - \=//
http://Bioinformatica.info
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