[BioPython] Martel installation

[Michiel Jan Laurens de Hoon]

For some reason, the Martel files were indeed missing from the Windows 
installers of Biopython.  I have made new Windows installers that now contain 
Martel. They are available at

http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/biopython-1.23.win32-py2.2.exe
http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/biopython-1.23.win32-py2.3.exe

(I'll remove these links once the installers are available from the Biopython 
website, I haven't figured out yet how to do that).

--Michiel.


Brad Chapman wrote:

> Hi Scott;
> Hope everything is going well with you.
> 
> 
>>Can anyone out there tell me where to install Martel? We need it for 
>>Clustalw. We tried installing it in site-packages and within Bio but no go. 
>>It does not seem to be included in Biopython for Python 2.3.
> 
> 
> Are you using the source distribution or the windows installer? I
> know it is in the source distribution but I'm not positive about the
> installer, as I didn't make it this time (and also don't have a
> windows computer on hand).
> 
> Either way, it is included in the source distribution so you can get
> it there. If it's on windows you can just unzip the source and move
> the Martel directory into site-packages (the same level as Bio,
> not inside Bio). You should be able to do a import Martel from the 
> python prompt after doing this.
> 
> If this doesn't work, can you provide some more information about
> what you mean by "no go" so I can try and provide better help?
> 
> Brad
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> 

-- 
Michiel de Hoon, Assistant Professor
University of Tokyo, Institute of Medical Science
Human Genome Center
4-6-1 Shirokane-dai, Minato-ku
Tokyo 108-8639
Japan
http://bonsai.ims.u-tokyo.ac.jp/~mdehoon