[BioPython] Trees in BioPython?

[Rune Linding - EMBL Biocomputing Unit]

Hi andreas!

sorry wasent clear...here are the scripts!

eattax.py builds a tree from the dump files and inserts it in our postgres db

query.py is an unfinished script to walk the tree and find subtrees...

i think both will go into bio.py  but for the moment they are unbelivable nasty hack code :) !!!


anyway have fun 

r.
On Thu, Sep 19, 2002 at 12:11:58PM -0400, Andreas Matern wrote:
> Hello,
> 
> How does one get access to those scripts, I can't seem to find them on 
> the web page...
> 
> -Andreas
> 
> Rune Linding - EMBL Biocomputing Unit wrote:
> >hi
> >
> >we have scripts for building the full ncbi tree from their dump files in 
> >the elm(http://elm.eu.org) project...
> >
> >
> >r.
> >On Thu, Sep 19, 2002 at 12:59:38PM +1000, Cath Lawrence wrote:
> >
> >>Hi,
> >>
> >>Is anyone working on phylogenetic trees?
> >>Are these likely to turn up in BioPython soon?
> >>
> >>(If not would you like ours?? In development, so not Real Soon.)
> >>
> >>cheers
> >>Cath
> >>Cath Lawrence,                       Cath.Lawrence@anu.edu.au
> >>Scientific Programmer,  Centre for Bioinformation Science,
> >>John Curtin School of Medical Research
> >>Australian National University,  Canberra ACT 0200
> >>ph: Maths (02) 6125 2904;  JCSMR (02) 6125 0417;
> >>mobile: 0421-902694   fax: (02) 61254712
> >>
> >>_______________________________________________
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> >
> >--
> >Rune Linding				room	v101
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> > 
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> 
> -- 
> --------------
> Andreas Matern
> Bioinformatician
> Bioinformatics - Research and Development
> Lion Bioscience Research Inc.
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--
Rune Linding				room	v101
EMBL - Biocomputing - Gibson Team	lab	+49 6221 387451
Meyerhofstrasse 1			fax	+49 6221 387517
D-69117 Heidelberg			cell	+49 1712 128951
Germany					http://www.EMBL-Heidelberg.DE/~linding
You can tell how far we have to go, when FORTRAN is the language of
supercomputers.
		-- Steven Feiner