[BioPython] Parsing NCBI_Standalone Blast according to release
Aidan Budd
budd@embl-heidelberg.de
Tue, 28 May 2002 17:23:50 +0200 (MET DST)
Hi!
typical story, my biopython blast-parsing scripts worked beautifully, now
I'm running a different blast version and now they're broken (stuff about
lines not beginning with ' ' mutter mutter blast mutter mutter).
(I was using standalone
BLAST 2.2.2 [Dec-14-2001]
now I've got
BLASTP 2.2.2 [Jan-08-2002])
so, of course, something's changed in the blast output...
<sigh>
my question is...
does anyone know if there is a way of getting from biopython a blast
parser to go with a particular version of blast? e.g. I know I'm using
blast 2.2.2 Dec-14-2001 release, so I go and get appropriate biopython
blast modules? Or is the best solution to go and get the blast version
that fits with the current biopython modules (if so, is there somewhere I
should look to find which blast the current biopython modules work with?)
any advice much appreciated!
thanks
aidan
*******************************************************************
Die Ente bleibt draussen!
[useful german phrase #9]
Aidan Budd
Gibson Team (v106)
Structural and Computational Biology Programme
European Molecular Biology Laboratory
Meyerhofstr. 1, 69117 Heidelberg, Germany
Tel. +49 6221 387-530
Fax. +49 6221 387-517
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