[BioPython] first steps into python
Ewan Birney
birney@ebi.ac.uk
Sat, 24 Feb 2001 13:44:46 +0000 (GMT)
Ok. To help Ensembl-->python (probably via CORBA) integration. I have
downloaded biopython and biopython-corba.
I am, therefore, belated learning python. Don't expect any road-to-damscus
type conversions (yet) however...
Some questions
(a) what is the difference between def __name__ and def name functions?
(b) how is inhertiance done in python
(c) is there any concept/files for interfaces either expliciting (java) or
"just documentation" like bioperl's "I" files
(d) could some one sketch out an easy biopython script like:
read embl file.
test whether there is a cacaca repeat in there
if yes, dump a genbank file.
yours from the rough-and-ready world of Perl...
e.
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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>.
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