[Biopython-dev] UniProt GOA parser

Peter Cock p.j.a.cock at googlemail.com
Wed Jun 4 14:26:19 UTC 2014

Hi Aravind,

The Gramene downloads page http://www.gramene.org/ftp-download
talks about all sorts of formats but not GAF.

Could you give us a specific example (e.g. the URL) of one of the
files you are hoping to parse?



On Wed, Jun 4, 2014 at 3:09 PM, Venkatesan <Aravind.Venkatesan at lirmm.fr> wrote:
> Hello all,
> I am new to Biopython. I need to parse a couple of GAF files provided by
> Gramene database (http://gramene.org/),  they contain associations for genes
> and qtl  to gene ontology but also to plant ontology, trait ontology (gaf
> 1.0 format). Is the parser uniport specific or is it a generic parser for
> GAF files. Your inputs are very much appreciated.
> Thank you,

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