[Biopython-dev] fastsimcoal

[Peter Cock]

On Thu, Feb 20, 2014 at 9:40 AM, Tiago Antão <tiagoantao at gmail.com> wrote:
> Hi,
>
> On 19 February 2014 23:05, Melissa Gymrek <mgymrek at mit.edu> wrote:
>>
>> it made sense to add it there. Would there be any interest in adding this?
>>
>
> I think this is great. I was actually thinking in deprecating simcoal
> support soon. So, my suggestion is:
>
> 1. Add this
> 2. Deprecate simcoal (I would take care of that). I think we need to go to
> the main biopython list and ask if someone is using this...
>
> But irrespective of the original code, I think this should be added.
>
> Tiago
> PS - You forgot to add your name to the copyright message at the top
> of Bio/PopGen/SimCoal/Controller.py

Sorry - one more thing, tests ;)

I would suggest making a copy of Tests/test_PopGen_SimCoal.py
for live testing with the new binary, and adding/copying static tests
in Tests/test_PopGen_SimCoal_nodepend.py if relevant.

Peter