[Biopython-dev] BWA command line change?

[Saket Choudhary]

Commited a fix here:
https://github.com/saketkc/biopython/commit/d884ee6e12a798b974b3a3996e22b5292ab79be6

If it looks good, I can send a PR?
Unfortunately my commit history is a bit muddled up on master.

On 29 April 2014 01:53, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Mon, Apr 28, 2014 at 9:07 PM, Saket Choudhary <saketkc at gmail.com> wrote:
>> This is turning out to be an issue with this particular version of
>> bwa[0.7.6a-r433];l
>> $ bwa7.6a aln
>> [main] unrecognized command 'aln'
>>
>> However the later two versions do support it, and the tests do pass:
>
> The simplest solution may be to check for that error during
> the header where we see if bwa is installed, and if it is
> missing the aln command skip the tests?
>
> Peter