[Biopython-dev] BWA command line change?

[Peter Cock]

On Mon, Apr 28, 2014 at 9:07 PM, Saket Choudhary <saketkc at gmail.com> wrote:
> This is turning out to be an issue with this particular version of
> bwa[0.7.6a-r433];l
> $ bwa7.6a aln
> [main] unrecognized command 'aln'
>
> However the later two versions do support it, and the tests do pass:

The simplest solution may be to check for that error during
the header where we see if bwa is installed, and if it is
missing the aln command skip the tests?

Peter