[Biopython-dev] Biopython update talk at BOSC 2014

[Wibowo Arindrarto]

Hi Tiago,

1. I have no objections to that. Could we change it post submission?
If you noticed, I listed the authors initially alphabetically based on
last name. After talking with Eric, I updated the order with the last
one submitted. But in general, I'm ok with any ordering so long as we
all agree.

2. I didn't have chance to add this prior to submission, unfortunately
:/. But adding this would be nice. Is it possible to do this during
abstract review?

3. Noted, thanks :).

Best,
Bow

On Mon, Apr 7, 2014 at 12:41 PM, Tiago Antao <tra at popgen.net> wrote:
> Hi,
>
> 1. Shouldn't Peter be the first author on the list?
>
> 2. We have 2 containers:
>    1. a container with all (almost) the dependencies, which can be used
>    to deploy biopython on the fly (for normal usage):
> https://github.com/tiagoantao/my-containers/blob/master/biopython/Biopython
>    2. A buildbot test container (that is in used for builbot testing):
> https://github.com/tiagoantao/my-containers/blob/master/biopython/Biopython-Test
>
> 3. My address: Vector Biology Department, Liverpool School of Tropical
> Medicine, Pembroke Place, Liverpool, United Kingdom
>
> On Wed, 2 Apr 2014 11:52:07 +0200
> Wibowo Arindrarto <w.arindrarto at gmail.com> wrote:
>
>> Hello everyone,
>>
>> I've finished the first draft of our update (attached). Please let me
>> know if there are additions / deletions you would like me to make
>> before I submit the abstract.
>>
>> Also, some things I would like to note:
>>
>> * I am missing the formal affiliations of everybody in the authors
>> list except for me and Peter. Could you please send me your most
>> recent affiliation?
>>
>> * I'm not sure about whether to include Tiago's recent Biopython
>> docker container (I think it would be nice). Tiago, do we have the
>> container up and running for our tests?
>>
>> Cheers,
>> Bow
>>
>> On Tue, Apr 1, 2014 at 11:37 PM, Peter Cock
>> <p.j.a.cock at googlemail.com> wrote:
>> > On Mon, Mar 31, 2014 at 10:08 PM, Wibowo Arindrarto
>> > <w.arindrarto at gmail.com> wrote:
>> >> Hi Peter, everyone,
>> >>
>> >> A LaTeX template would be great :). I'm still preparing the
>> >> abstract, should be ready for everyone to check soon.
>> >>
>> >> Cheers,
>> >> Bow
>> >
>> > LaTeX template sent.
>> >
>> > I will be travelling the next few days and may be largely out of
>> > email contact - so if you don't hear from me, don't worry and
>> > submit the abstract anyway. I'm confident the others will have
>> > good advice and suggestions (and I'm not the only one who
>> > does email list moderation - but it might be simpler to send
>> > round plain text and a link to the PDF if you want to show it
>> > and not worry about the attachment triggering moderation).
>> >
>> > As usual this will get reviewed by the BOSC panel, and you'll
>> > have a chance to revise the abstract at that point - for the
>> > project updates is it OK if the initial text has a couple of details
>> > "to be confirmed", like a summary of the forthcoming release
>> > Biopython 1.64 (time for another thread, maybe we can aim
>> > for the end of this month?).
>> >
>> > Thanks Bow,
>> >
>> > Peter
>