[Biopython-dev] [PATCH] Various NACCESS fixes and unit tests
Gökcen Eraslan
gokcen.eraslan at gmail.com
Mon Nov 25 11:37:59 UTC 2013
On 2013-11-25 12:15, Peter Cock wrote:
> Hi Gokcen,
>
Hello,
> This looks very promising - would you be happy to submit this patch
> as a pull request on GitHub?
>
Done.
> Thanks,
>
> Peter
>
> P.S. Thanks for this report & fix:
> https://github.com/biopython/biopython/pull/261
>
>
> On Mon, Nov 25, 2013 at 12:23 AM, Gökcen Eraslan
> <gokcen.eraslan at gmail.com> wrote:
>> Hello,
>>
>> I am developing a machine learning project which is using some command line
>> tools such as NACCESS, STRIDE, netsurfp. I have decided to use BioPython and
>> started digging NACCESS and DSSP codes in Bio/PDB to learn more about how to
>> write parsers for BioPython.
>>
>> I have made some minor changes to NACCESS code and prepared some unit test
>> files. Patch is attached. It would be nice to push this to master branch.
>>
>> I am also writing parsers for STRIDE and netsurfp tools and I would like to
>> send those when I finish writing.
>>
>> Regards.
>>
>> --
>> Gokcen Eraslan
>>
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>> http://lists.open-bio.org/mailman/listinfo/biopython-dev
>>
--
Gökçen Eraslan
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