[Biopython-dev] Contributing - description of my code [Sequence_cleaner]

Sebastian Bassi sbassi at clubdelarazon.org
Tue Jul 12 15:28:59 UTC 2011

On Thu, Jul 7, 2011 at 10:18 PM, Genivaldo Gueiros
<genivaldo.gueiros at gmail.com> wrote:
> Let me call my script as “Sequence_cleaner” and the big idea is to remove
> duplicate sequences, remove sequence too short ( the user define the minimum
> length)  and remove sequences which has too much unknown nucleotides ( N)  (
> the user define the % of N is allows ) and in the end the use can choose if
> he/she wanna have a file as output or print the result.

You should take a look at seqclean utility. Some methods should be
apply only to the extremes.

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