[Biopython-dev] Contributing - description of my code [Sequence_cleaner]

[Genivaldo Gueiros]

Gotcha , I gonna read and  probably add.

Thx

2011/7/8 Peter Cock <p.j.a.cock at googlemail.com>

> On Fri, Jul 8, 2011 at 2:18 AM, Genivaldo Gueiros
> <genivaldo.gueiros at gmail.com> wrote:
> > Hey guys , I ‘d like to make a contribution to Biopython community ,Well
> > what I wanna share my script using python to clean sequences up , you
> should
> > know analyzing poor data takes CPU time and interpreting the results from
> > poor data takes people time, so always is importat make a preprocessing.
> >
> > Let me call my script as “Sequence_cleaner” and the big idea is to remove
> > duplicate sequences, remove sequence too short ( the user define the
> minimum
> > length)  and remove sequences which has too much unknown nucleotides ( N)
>  (
> > the user define the % of N is allows ) and in the end the use can choose
> if
> > he/she wanna have a file as output or print the result.
> >
> > Let me know if you are interested
> >
>
> Hi Genivaldo,
>
> This sounds like something you could add to the list here,
> http://biopython.org/wiki/Scriptcentral
>
> Or it might make a nice Cookbook example:
> http://biopython.org/wiki/Category:Cookbook
>
> Peter
>



-- 
Cheers,
Geni