[Biopython-dev] Primary Sequence of all protein (help)

[Rodrigo Faccioli]

Sebastian,

Thank you for your reply. I'll study it.

--
Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
http://laips.sel.eesc.usp.br
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218


On Wed, Mar 17, 2010 at 3:32 PM, Sebastian Bassi
<sbassi at clubdelarazon.org>wrote:

> On Tue, Mar 16, 2010 at 4:24 PM, Rodrigo Faccioli
> <rodrigo_faccioli at uol.com.br> wrote:
> > I want to know the primary sequence (fasta file) of all proteins. In
> other
> > the words, I would like a database which contain the fasta files of all
> > proteins.
>
> You don't need Biopython to get this file. Just download NR database y
> use "fastacmd", a program found in the blast suite.
> BLAST FTP is not working for me right now so I can't give you the
> exact URL to download, but look from here:
> ftp://ftp.ncbi.nih.gov/blast/
> Here is how to use fastacmd to retrieve sequences from NR database:
> http://pwet.fr/man/linux/commandes/fastacmd
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