[Biopython-dev] [Bug 2966] Primer3Commandline does not use EMBOSS 6.1.0 arguments

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2966





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2010-03-17 07:33 EST -------
(In reply to comment #2)
> I also found an issue with the PrimerSearchCommandline.  The command line
> options -sequences and -primers do not appear to be used in EMBOSS6.1.0, having
> been replaced by -seqall and -infile, respectively.  I changed the options
> accordingly, and the modified files are available at
> http://github.com/widdowquinn/biopython/tree/emboss-branch.

I've merged that fix on the master,
http://github.com/biopython/biopython/commit/39708be130eb771eacccf96eed3e8ce0a44ea4f0

Will have a look at eprimer3 next.


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