[Biopython-dev] [Bug 3103] Possibly corrupt - ncbi_taxonomy_mollusca.xml.zip in Tests/PhyloXML

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Sun Jun 27 15:31:11 UTC 2010


------- Comment #1 from eric.talevich at gmail.com  2010-06-27 11:31 EST -------
Interesting. Where did you get this release of Biopython 1.54? From PyPI, or

I downloaded this file from phyloxml.org originally, and haven't changed it.
This file is used in the unit tests, and Python's zipfile library doesn't seem
to have any trouble opening it. The 'file' command on Ubuntu 10.04 identifies
it as:
"Zip archive data, at least v2.0 to extract"

It's actually not a very important part of the unit tests anyway, so if it's
causing you trouble, I could give you a patch to remove this file from the unit

(If you're taking patches, there's a bug in Bio.Phylo's Nexus parsing that I'd
like to include a fix for, too. It's fixed in Biopython's trunk already, but
slipped past our release process for v.1.54.)

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