[Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 17 15:07:55 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2950





------- Comment #4 from barry_finzel at yahoo.com  2009-11-17 10:07 EST -------
Structures coming from the PDB should have sequentially-numbered models -
usually starting with one, although the reason I was looking at this was that I
would like to extract the model into separate files but still retain
information regarding their original source.  (So a Structure might contain
only MODEL 6, for example).  I don't imagine ever having multiple models out of
order..,  MODEL 4, then 2, then 1, then 8, etc).

It would be helpful if the model id on the input record was stored and
retrievable.  Since code (no doubt) exists with references like struct[0], it
might be better to create a new model attribute (model.label?) to store the
label as a string, so old indexed references still work.


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