[Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO
bugzilla-daemon at portal.open-bio.org
bugzilla-daemon at portal.open-bio.org
Wed Jun 3 16:36:40 UTC 2009
http://bugzilla.open-bio.org/show_bug.cgi?id=2826
biopython-bugzilla at maubp.freeserve.co.uk changed:
What |Removed |Added
----------------------------------------------------------------------------
Status|NEW |RESOLVED
Resolution| |FIXED
------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk 2009-06-03 12:36 EST -------
As of Bio/SeqIO/InsdcIO.py CVS revision 1.15, a SeqRecord's dbxrefs are
recorded under the DBLINK lines when writing a GenBank file with Bio.SeqIO.
Note that the code does not (currently) restrict this to the two database cross
references the NCBI currently use for this field, e.g. "Project:28471" and
"Trace Assembly Archive:123456", anything in the dbxrefs list is recorded.
Marking this bug as fixed.
Note if you want to test this, a clean CVS/git checkout would be advised
(rather than trying to update individual files only).
Peter
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