[Biopython-dev] biopython-1.51 test log, sage inclusion

Peter biopython at maubp.freeserve.co.uk
Mon Aug 17 16:35:53 UTC 2009


On Mon, Aug 17, 2009 at 5:28 PM, Peter<biopython at maubp.freeserve.co.uk> wrote:
>
> The others are all ImportErrors (e.g. cannot import name _CKDTree)
> I rather suspect you are running the test suite BEFORE compiling
> the C extensions, and that this may similarly affect Bio.Restriction.

Also this line is interesting - it suggest you have not installed NumPy,
or not told sage is is a dependency?

test_Cluster ... skipping. If you want to use Bio.Cluster, install
NumPy first and then reinstall Biopython

P.S. Why does this page talk about Biopython version "4.2b"?
http://wiki.sagemath.org/Sage_Spkg_Tracking

Peter



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