[Biopython-dev] biopython-1.51 test log, sage inclusion
Marshall Hampton
mhampton at d.umn.edu
Mon Aug 17 15:42:39 UTC 2009
Hi,
I am preparing biopython-1.51 for inclusion as an optional package for
Sage (www.sagemath.org). I ran the test suite and got 8 errors; I am not
sure if these are all expected. The KDTree ones I have seen before, but
some look new. My test log is available at:
http://sage.math.washington.edu/home/mhampton/biopython-1.51-testlog.txt
in case anyone wants to take a look.
Biopython has been available in Sage for several years as an optional
package, but I would like to make it a standard component. This has
become much more likely since the clean-up of Numeric and mx-texttools
dependencies. I think the only real issue is setting up some testing
during the Sage package installation, which is my motivation for really
understanding the test failures.
Cheers,
Marshall Hampton
Department of Mathematics and Statistics
University of Minnesota, Duluth
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