[Biopython-dev] [Bug 2896] BLAST XML parser: stripped leading/trailing spaces in Hsp_midline

Thu Aug 6 08:03:03 UTC 2009

http://bugzilla.open-bio.org/show_bug.cgi?id=2896

biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED

------- Comment #7 from biopython-bugzilla at maubp.freeserve.co.uk  2009-08-06 04:03 EST -------
(In reply to comment #6)
> 
> Ok, the fix seems to solve the problem.
>

Great - I'm marking this bug as fixed, thanks for your time reporting and then
testing this.

> Well I guess the only time when this problem appears is when you have
> filtered/masked residues at the beginning/end of the query hsp. Otherwise
> the hsp would just start with the first match and end with the last one.

I suspect there are other situations it might happen, but the fix is
general.

Cheers,

Peter

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