[Biopython-dev] [Bug 2907] When a genomic record has been loaded using eFetch, if it is written to genbank format the header line refers to 'aa'

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2907


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-08-25 05:40 EST -------
Hi David,

I spotted this (aa/bp mix up in the LOCUS line) after the beta was out, and it
should already be fixed in Biopython 1.51 final. Please update and retest, and
if there is still a problem please reopen this bug. Thanks!

Note that unless I was going to modify the annotation (which the background use
case suggests you are), I would save the raw GenBank record from Entrez
directly to disk (since parsing it and then writing it back out with SeqIO
isn't yet perfect - e.g. the date in the LOCUS line).

Peter


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