[Biopython-dev] [Bug 2837] Reading Roche 454 SFF sequence read files in Bio.SeqIO

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2837





------- Comment #3 from biopython-bugzilla at maubp.freeserve.co.uk  2009-08-14 11:23 EST -------
(In reply to comment #2)
> (From update of attachment 1303 [details])
> This file is already a tiny bit out of date - I've started working on this
> on a git branch.
> 
> http://github.com/peterjc/biopython/commits/sff

Actually, I got rid of that branch after merging it into my work on Bio.SeqIO
indexing. I can now parse the Roche SFF index, allowing fast random access to
the reads. See:

http://github.com/peterjc/biopython/commits/index
http://lists.open-bio.org/pipermail/biopython-dev/2009-August/006603.html

Peter


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