[Biopython-dev] [Bug 2815] Bio.Application command line interfaces

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2815





------- Comment #16 from biopython-bugzilla at maubp.freeserve.co.uk  2009-04-28 13:32 EST -------
(In reply to comment #15)
> 
> Yeah - use something like that, but be aware that the tests shouldn't assume
> that the executable name is just "muscle".  Hopefully test_Muscle_tool.py does
> this right...
> 

Well, it does now.  I've got test_Muscle_tool.py to run on Windows, assuming
the user chooses to put MUSCLE under the program files directory in a
reasonably predictable folder.  Given the MUSCLE installation process on
Windows is entirely manual, we can't really do anything else.


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