[Biopython-dev] KDTree to numpy

[Marcin Cieślik]

Hi,

I was able to make KDtrees work with numpy. There where no real problems
apart from my complete lack of c++/swig skills. It seems to me that
everything is working fine.

the includes in KDTree.i look like this:

%{
	#include "KDTree.h"
	#include
</usr/lib/python2.5/site-packages/numpy/core/include/numpy/arrayobject.h>
%}
is this correct? Changes in .py files where really small.

i compiled/tested it on linux

make clean
rm *.o
rm *.so
make
gcc -c KDTree.cpp KDTree.swig.cpp -I/usr/include/python2.5
g++ -shared KDTree.swig.o KDTree.o -o _CKDTree.so

you can get it here:
http://149.156.87.35/~marcin_cieslik/KDTree2.tar.gz

Marcin