[Biopython-dev] [Bug 2382] Generic Roche or GSFlex "FASTA" parser

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2382


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
            Summary|Generic FASTA parser        |Generic Roche or GSFlex
                   |                            |"FASTA" parser




------- Comment #10 from biopython-bugzilla at maubp.freeserve.co.uk  2007-10-17 04:06 EST -------
Now that I'm clear where these files come from, I would agree with Michiel that
a separate Bio.GSFlex or Bio.Roche module would make more sense.  I've added
these keywords to the bug summary (to help anyone searching in future).

P.S. From Michiel's example, you could use the existing SeqRecord annotations
dictionary if you wanted to avoid adding a new attribute to the objects on the
fly.

for seqrecord, quality in zip(seqrecords, qualities):
    #seqrecord.quality = quality
    #If you would rather use the existing dictionary:
    seqrecord.annotations["quality"] = quality


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