[Biopython-dev] [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Oct 15 11:11:26 UTC 2007


tiagoantao at gmail.com changed:

           What    |Removed                     |Added
                 CC|                            |tiagoantao at gmail.com

------- Comment #3 from tiagoantao at gmail.com  2007-10-15 07:11 EST -------
I had a look at the test code and tried to find which test case is changing the
ambiguous_dna dict.

I used this little script (putting it here as it might be useful for detecting
these types of problems):

for i in test_*py; do
  python run_tests.py  $i;

It turns out that it is text_Nexus.py. A further inspection to the code seems
to reveal that is not the test case that pollutes the dictionary but the Nexus
modules itself.

Maybe it makes sense to raise a bug on the Nexus module... Any comments on
these findings?

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