[Biopython-dev] [Bug 2366] Ambiguous nucleotides in (Reverse)complement functions in Bio.Seq

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2366


mdehoon at ims.u-tokyo.ac.jp changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|RESOLVED                    |REOPENED
         Resolution|FIXED                       |




------- Comment #6 from mdehoon at ims.u-tokyo.ac.jp  2007-10-17 03:01 EST -------
The Biopython test currently fails:

======================================================================
FAIL: test_seq
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 151, in runTest
    self.runSafeTest()
  File "run_tests.py", line 188, in runSafeTest
    expected_handle)
  File "run_tests.py", line 289, in compare_output
    "\nOutput  : "+`output_line` + "\nExpected: "+`expected_line`
AssertionError:
Output  : "Seq('ACBDGHKMNSRUWVYX', Alphabet()) -> Seq('XRBWAYSNKMDCHVGU',
Alphabet())\n"
Expected: "Seq('ACBDGHKMNSRUWVYX', Alphabet()) -> Seq('XYVWARSNMKHCDBGU',
Alphabet())\n"

----------------------------------------------------------------------


This is with a fresh checkout from CVS.


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