[Biopython-dev] [Bug 2340] SProt.py fails to parse the current Swiss-Prot version 54.0

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Jul 27 06:46:35 UTC 2007


------- Comment #5 from gould at embl.de  2007-07-27 02:46 EST -------
(In reply to comment #4)
> I think I have fixed this - at least your example code now works.
> You'll need to update the file Bio/SwissProt/SProt.py to revision 1.38 from
> CVS, which you can download here:
> http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SwissProt/SProt.py?cvsroot=biopython
> Don't forget to backup the old Bio/SwissProt/SProt.py first, in case you want
> to put things back.
> Please test this and report back.
> NOTE - The fix just makes the parser aware of the new PE line, and ignores it. 
> It doesn't (yet) do anything useful with the information it contains!

Yes it has done the trick and all works OK again. thanks

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