[Biopython-dev] [Bug 2340] SProt.py fails to parse the current Swiss-Prot version 54.0

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2340





------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2007-07-26 12:51 EST -------
I think I have fixed this - at least your example code now works.

You'll need to update the file Bio/SwissProt/SProt.py to revision 1.38 from
CVS, which you can download here:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SwissProt/SProt.py?cvsroot=biopython

Don't forget to backup the old Bio/SwissProt/SProt.py first, in case you want
to put things back.

Please test this and report back.

NOTE - The fix just makes the parser aware of the new PE line, and ignores it. 
It doesn't (yet) do anything useful with the information it contains!


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