[Biopython-dev] [Bug 2421] New: BioSQL should store and retrieve a SeqRecord's dbxrefs

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2421

           Summary: BioSQL should store and retrieve a SeqRecord's dbxrefs
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: BioSQL
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


Looking over the code, BioSQL doesn't seem to even try and store database cross
references in a SeqRecord's dbxrefs list.  It will however store other cross
references, e.g. in references and in features.

See also:

Bug 2390 comment 21 - Error importing Swiss Prot in BioSQL
It was pointed out that SwissProt DR lines don't get into the database.
The first problem was they didn't even make it to the SeqRecord...

Bug 2235 - SeqRecord from Bio.SwissProt.SProt lacks annotation information
The latest parser in CVS will now load DR lines into the dbxrefs list.


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