[Biopython-dev] [Bug 2353] Problem parsing Swissprot (UniProt) files

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2353





------- Comment #5 from ibdeno at gmail.com  2007-08-29 08:17 EST -------
In fact I have the complete data from M.thermoautotrophicum downloaded from
Integr8:

ftp://ftp.ebi.ac.uk/pub/databases/integr8/uniprot/proteomes/27.M_thermoautotrophicum.dat.gz

I thought that this might be too particular to Integr8 and perhaps not worth
hard-wiring in the SProt.py code. However, couldn't the parser end more
gracefully on a record having unknown starter identifier? Perhaps giving a
message, but not stopping.

Cheers,


Miguel


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